Journal Publications

1. Yuichi N, Zhang X, Jeong J, Peterson KA, Vedenko A, Bulyk ML, Winston HA, McMahon AP. A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors. Development. 2015;142(19):3286-3293. [link]

2. Pascual-Garcia P, Jeong J, Capelson M. Nuclear pore protein Nup98 associates with histone modifying complexes and regulates Hox gene expression. Cell Reports. 2014;9(2):433-442. [link]

3. Jeong J. The role of Cockayne Syndrome Protein B in transcription regulation. Genomics Data. 2014;2:302-304. [link]

4. Lake RJ, Boetefuer E, Tsai P, Jeong J, Choi I, Won K, Fan H. The Sequence-Specific Transcription Factor c-Jun Targets Cockayne Syndrome Protein B to Regulate Transcription and Chromatin Structure. PLoS Genetics. 2014;10(4):e1004284. [link]

5. Sandberg CJ, Altschuler G, Jeong J, Strømme KK, Strangeland B, Murrell W, Grasmo-Wendler UH, Myklebost O, Helseth E, Vik-Mo EO, Hide W, Langmoen IA. Comparison of glioma stem cells from the adult human brain identifies dysregulated Wnt-signaling and a fingerprint associated with clinical outcome. Experimental Cell Research. 2013;319(14):2230-2243. [link]

6. Berman P, Jeong J. Consistent sets of secondary structures in proteins. Algorithmica. 2009;53(1):16-34. [link]

7. Jeong J, Berman P. On cycles in the transcription network of Saccharomyces cerevisiae. BMC Systems Biology. 2008;2:12. [link]

8. Jeong J, Berman P, Przytycka T. Improving strand pairing prediction through exploring folding cooperativity. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2008;5(4):484-91. [link]

9. Jeong J, Berman P. Low-cost search in scale-free networks. Physical Review E. 2007;75:036104. [link]

10. Jeong J, Berman P, Przytycka T. Fold classification based on secondary structure – how much is gained by including loop topology?. BMC Structural Biology. 2006;6:3. [link]

Conference Publications

11. Jeong J, Gupta M, Poleshko A, Epstein JA. Combinatorial identification of broad association regions with ChIP-seq data. In Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC) 2016;3:27-34. [link]

12. Jeong J, Chen J. RIC: Ranking with Interaction Chains and its Applications in Computational Clinical Proteomics Studies. In Proceedings of the International Conference on Bioinformatics & Biomedicine (BIBM) 2009;216-221. [link]

13. Jeong J, Berman P, Przytycka T. Bringing folding pathways into strand pairing prediction. In Proceedings of the Workshop on Algorithms in Bioinformatics (WABI) 2007;38-48. [link]

14. Berman P, Jeong J, Kasiviswanathan S, Urgaonkar B. Packing to angles and sectors. In Proceedings of the 19th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA) 2007;171-180. [link]

Preprints

15. Jeong J, Kellis M. Comparison of human and mouse tissues with focus on genes with no 1-to-1 homology. bioRxiv 2021.05.22.445250. [link]

Book Chapters

16. Jeong J and Chen J. Techniques for Prioritization of Disease Genes, in Computational Intelligence and Pattern Analysis in Biological Informatics. John Wiley & Sons, Inc., Hoboken, NJ, USA. November 2010, pp. 309-324. [link]

Posters

17. Dey J, Liu P, Mayo M, Karnik R, Yang B, Dixit V, Jeong J, Shaw J, Shi Y, Breitkopf S, Dirk W, Sharma K, Gollob J, De Savi C. Targeted STAT3 Degradation Leads to Remodeling of an Immunosuppressive Tumor Microenvironment and Subsequent Sensitization to Immune Checkpoint Inhibition. SITC 2021 [link]

18. Jeong J, Nishi Y, McMahon A. Polycomb repression and RNA polymerase in neural tube development. HSCI Malkin Retreat: Innovating Stem Cell Research, Harvard University,May 18,2012. ISMB/ECCB 2013, Berlin, Germany, July 19-23, 2013 [link, link]

19. Jeong J, Krivtsov A, Armstrong S, Hide W. Pathway Guided Modules –
a method to identify key proteins. Intelligent Systems for Molecular Biology (ISMB), Boston, Massachusetts, July 11-13, 2010 [link]

20. Jeong J and Berman P. Cycles in the transcription network of S. cerevisiae.
RECOMB Regulatory Genomics 2007, MIT/Broad, Oct 11-13, 2007 [link]

21. Berman P and Jeong J. Consistent sets of secondary structures in proteins.
DIMACS Workshop on Information Processing by Protein Structure in Molecular
Recognition, Rutgers University, June 13-14, 2005
RECOMB 2006, Venice Lido, April 2-5, 2006